J3_6T59_020
3D structure
- PDB id
- 6T59 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6T59|1|54|G|409, 6T59|1|54|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T59_020 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2962
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T59|1|54|U|380
6T59|1|54|U|381
6T59|1|54|G|382
6T59|1|54|A|383
6T59|1|54|A|384
6T59|1|54|A|385
6T59|1|54|A|386
6T59|1|54|G|387
6T59|1|54|A|388
6T59|1|54|A|389
6T59|1|54|C|390
*
6T59|1|54|G|401
6T59|1|54|A|402
6T59|1|54|G|403
6T59|1|54|U|404
6T59|1|54|U|405
6T59|1|54|C|406
6T59|1|54|A|407
6T59|1|54|A|408
6T59|1|54|G|409
6T59|1|54|A|410
6T59|1|54|G|411
6T59|1|54|G|412
6T59|1|54|G|413
6T59|1|54|C|414
6T59|1|54|G|415
*
6T59|1|84|C|19
6T59|1|84|A|20
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Tubulin Beta
- Chain C3
- uL4
- Chain NA
- Nascent polypeptide-associated complex subunit alpha
- Chain P3
- uL22
- Chain TT
- Tetratricopeptide repeat protein 5
- Chain Y3
- Ribosomal protein L26
- Chain l3
- eL39
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