J3_6T59_023

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T59_023 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1869

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6T59|1|54|A|2598
6T59|1|54|G|2599
6T59|1|54|A|2600
6T59|1|54|A|2601
6T59|1|54|G|2602
*
6T59|1|54|C|2737
6T59|1|54|C|2738
*
6T59|1|54|G|2742
6T59|1|54|A|2743
6T59|1|54|A|2744
6T59|1|54|A|2745
6T59|1|54|A|2746
6T59|1|54|U|2747

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain g3

eL34

Chain p3

eL43