J3_6T7I_019
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T7I_019 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1108
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6T7I|1|C2|A|760
6T7I|1|C2|G|761
6T7I|1|C2|A|762
6T7I|1|C2|G|763
*
6T7I|1|C2|C|773
6T7I|1|C2|A|774
6T7I|1|C2|G|775
*
6T7I|1|C2|U|785
6T7I|1|C2|C|786
6T7I|1|C2|G|787
6T7I|1|C2|A|788
6T7I|1|C2|A|789
6T7I|1|C2|U|790
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S24-A
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