J3_6T7I_022
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T7I_022 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1986
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6T7I|1|C2|C|1161
6T7I|1|C2|C|1162
6T7I|1|C2|A|1163
6T7I|1|C2|G|1164
*
6T7I|1|C2|C|1581
6T7I|1|C2|U|1582
6T7I|1|C2|A|1583
6T7I|1|C2|G|1584
6T7I|1|C2|U|1585
6T7I|1|C2|A|1586
6T7I|1|C2|A|1587
*
6T7I|1|C2|U|1609
6T7I|1|C2|G|1610
6T7I|1|C2|A|1611
6T7I|1|C2|U|1612
6T7I|1|C2|U|1613
6T7I|1|C2|A|1614
6T7I|1|C2|C|1615
6T7I|1|C2|G|1616
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain SF
- Rps5p
- Chain SQ
- 40S ribosomal protein S16-A
- Chain Sc
- 40S ribosomal protein S28-B
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