J3_6T7I_025
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 6T7I|1|C2|A|1217, 6T7I|1|C2|G|1445, 6T7I|1|C2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T7I_025 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1249
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6T7I|1|C2|C|1215
6T7I|1|C2|C|1216
6T7I|1|C2|A|1217
6T7I|1|C2|G|1218
6T7I|1|C2|A|1219
6T7I|1|C2|C|1220
*
6T7I|1|C2|G|1263
6T7I|1|C2|G|1264
6T7I|1|C2|G|1265
6T7I|1|C2|U|1266
6T7I|1|C2|G|1267
*
6T7I|1|C2|U|1442
6T7I|1|C2|U|1443
6T7I|1|C2|A|1444
6T7I|1|C2|G|1445
6T7I|1|C2|A|1446
6T7I|1|C2|C|1447
6T7I|1|C2|G|1448
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10-A
- Chain Sd
- 40S ribosomal protein S29-A
- Chain Sf
- Ubiquitin-40S ribosomal protein S31
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