J3_6T7T_011

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_011 not in the Motif Atlas

Geometric match to J3_8C3A_054

Geometric discrepancy: 0.1296

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6T7T|1|C1|C|1631
6T7T|1|C1|A|1632
*
6T7T|1|C1|U|1641
6T7T|1|C1|A|1642
6T7T|1|C1|A|1643
6T7T|1|C1|C|1644
6T7T|1|C1|U|1645
*
6T7T|1|C1|A|1810
6T7T|1|C1|G|1811

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A

Chain Lk

60S ribosomal protein L38