J3_6T7T_015

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6T7T|1|C1|A|2887, 6T7T|1|C1|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_015 not in the Motif Atlas

Geometric match to J3_8C3A_011

Geometric discrepancy: 0.0896

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6T7T|1|C1|U|2886
6T7T|1|C1|A|2887
6T7T|1|C1|U|2888
6T7T|1|C1|C|2889
*
6T7T|1|C1|G|2914
6T7T|1|C1|U|2915
6T7T|1|C1|U|2916
*
6T7T|1|C1|A|2930
6T7T|1|C1|C|2931
6T7T|1|C1|U|2932
6T7T|1|C1|A|2933
6T7T|1|C1|A|2934
6T7T|1|C1|U|2935
6T7T|1|C1|A|2936

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A

Chain LV

60S ribosomal protein L23-A