3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T7T_023 not in the Motif Atlas
Geometric match to J3_8C3A_039
Geometric discrepancy: 0.0979
The information below is about J3_8C3A_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.3
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6T7T|1|C2|U|1168
6T7T|1|C2|G|1169
6T7T|1|C2|G|1170
6T7T|1|C2|A|1171
*
6T7T|1|C2|U|1468
6T7T|1|C2|A|1469
6T7T|1|C2|C|1470
*
6T7T|1|C2|G|1574
6T7T|1|C2|G|1575
6T7T|1|C2|A|1576
6T7T|1|C2|A|1577

Current chains

Chain C2
18S rRNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain 7
Transfer RNA; tRNA
Chain SF
Rps5p
Chain SQ
40S ribosomal protein S16-A
Chain SS
40S ribosomal protein S18-A
Chain ST
40S ribosomal protein S19-A
Chain SZ
40S ribosomal protein S25-A

Coloring options:


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