J3_6T7T_023
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T7T_023 not in the Motif Atlas
- Geometric match to J3_8C3A_039
- Geometric discrepancy: 0.0979
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6T7T|1|C2|U|1168
6T7T|1|C2|G|1169
6T7T|1|C2|G|1170
6T7T|1|C2|A|1171
*
6T7T|1|C2|U|1468
6T7T|1|C2|A|1469
6T7T|1|C2|C|1470
*
6T7T|1|C2|G|1574
6T7T|1|C2|G|1575
6T7T|1|C2|A|1576
6T7T|1|C2|A|1577
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain 7
- Transfer RNA; tRNA
- Chain SF
- Rps5p
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SS
- 40S ribosomal protein S18-A
- Chain ST
- 40S ribosomal protein S19-A
- Chain SZ
- 40S ribosomal protein S25-A
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