J3_6T7T_025

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6T7T|1|C2|A|1217, 6T7T|1|C2|G|1445, 6T7T|1|C2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_025 not in the Motif Atlas

Geometric match to J3_4V88_038

Geometric discrepancy: 0.1262

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6T7T|1|C2|C|1215
6T7T|1|C2|C|1216
6T7T|1|C2|A|1217
6T7T|1|C2|G|1218
6T7T|1|C2|A|1219
6T7T|1|C2|C|1220
*
6T7T|1|C2|G|1263
6T7T|1|C2|G|1264
6T7T|1|C2|G|1265
6T7T|1|C2|U|1266
6T7T|1|C2|G|1267
*
6T7T|1|C2|U|1442
6T7T|1|C2|U|1443
6T7T|1|C2|A|1444
6T7T|1|C2|G|1445
6T7T|1|C2|A|1446
6T7T|1|C2|C|1447
6T7T|1|C2|G|1448

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10-A

Chain Sd

40S ribosomal protein S29-A

Chain Sf

Ubiquitin-40S ribosomal protein S31