J3_6T7T_027

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_027 not in the Motif Atlas

Geometric match to J3_4V88_082

Geometric discrepancy: 0.1379

The information below is about J3_4V88_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.1

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6T7T|1|C2|U|1293
6T7T|1|C2|G|1294
*
6T7T|1|C2|U|1303
6T7T|1|C2|G|1304
6T7T|1|C2|U|1305
6T7T|1|C2|C|1306
*
6T7T|1|C2|G|1318
6T7T|1|C2|A|1319
6T7T|1|C2|U|1320
6T7T|1|C2|A|1321
6T7T|1|C2|A|1322

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0-A

Chain SC

40S ribosomal protein S2

Chain SR

40S ribosomal protein S17-B