J3_6T7T_032

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

6T7T|1|C1|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_032 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1097

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75408.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6T7T|1|C1|C|185
6T7T|1|C1|U|186
6T7T|1|C1|A|187
6T7T|1|C1|U|188
6T7T|1|C1|G|189
*
6T7T|1|C1|C|205
6T7T|1|C1|G|206
6T7T|1|C1|U|207
6T7T|1|C1|C|208
6T7T|1|C1|A|209
6T7T|1|C1|U|210
6T7T|1|C1|A|211
6T7T|1|C1|G|212
6T7T|1|C1|A|213
6T7T|1|C1|G|214
*
6T7T|1|C1|C|226
6T7T|1|C1|G|227
6T7T|1|C1|U|228
6T7T|1|C1|G|229
6T7T|1|C1|U|230
6T7T|1|C1|G|231

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A