J3_6T83_020

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_020 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1565

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6T83|1|2b|A|760
6T83|1|2b|G|761
6T83|1|2b|A|762
6T83|1|2b|G|763
*
6T83|1|2b|C|773
6T83|1|2b|A|774
6T83|1|2b|G|775
*
6T83|1|2b|U|785
6T83|1|2b|C|786
6T83|1|2b|G|787
6T83|1|2b|A|788
6T83|1|2b|A|789
6T83|1|2b|U|790

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Jb

40S ribosomal protein S9-A

Chain Yb

40S ribosomal protein S24-A