J3_6T83_026

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6T83|1|2b|A|1217, 6T83|1|2b|G|1445, 6T83|1|2b|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_026 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1588

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6T83|1|2b|C|1215
6T83|1|2b|C|1216
6T83|1|2b|A|1217
6T83|1|2b|G|1218
6T83|1|2b|A|1219
6T83|1|2b|C|1220
*
6T83|1|2b|G|1263
6T83|1|2b|G|1264
6T83|1|2b|G|1265
6T83|1|2b|U|1266
6T83|1|2b|G|1267
*
6T83|1|2b|U|1442
6T83|1|2b|U|1443
6T83|1|2b|A|1444
6T83|1|2b|G|1445
6T83|1|2b|A|1446
6T83|1|2b|C|1447
6T83|1|2b|G|1448

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Kb

40S ribosomal protein S10-A

Chain db

40S ribosomal protein S29-A

Chain fb

Ubiquitin-40S ribosomal protein S31