J3_6T83_041

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6T83|1|Aa|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_041 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1801

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6T83|1|Aa|U|1479
6T83|1|Aa|G|1480
6T83|1|Aa|A|1481
6T83|1|Aa|A|1482
6T83|1|Aa|G|1483
6T83|1|Aa|U|1484
6T83|1|Aa|G|1485
*
6T83|1|Aa|C|1857
6T83|1|Aa|A|1858
6T83|1|Aa|A|1859
*
6T83|1|Aa|U|1871
6T83|1|Aa|C|1872
6T83|1|Aa|U|1873
6T83|1|Aa|A|1874

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L19-A

Chain R

60S ribosomal protein L34-A