J3_6T83_056

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_056 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1309

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6T83|1|a|C|1161
6T83|1|a|C|1162
6T83|1|a|A|1163
6T83|1|a|G|1164
*
6T83|1|a|C|1581
6T83|1|a|U|1582
6T83|1|a|A|1583
6T83|1|a|G|1584
6T83|1|a|U|1585
6T83|1|a|A|1586
6T83|1|a|A|1587
*
6T83|1|a|U|1609
6T83|1|a|G|1610
6T83|1|a|A|1611
6T83|1|a|U|1612
6T83|1|a|U|1613
6T83|1|a|A|1614
6T83|1|a|C|1615
6T83|1|a|G|1616

Current chains

Chain a

18S rRNA

Nearby chains

Chain 3

40S ribosomal protein S28-B

Chain g

Rps5p

Chain r

40S ribosomal protein S16-A