J3_6TB3_009

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6TB3|1|2|A|1217, 6TB3|1|2|G|1445, 6TB3|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TB3_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1157

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6TB3|1|2|C|1215
6TB3|1|2|C|1216
6TB3|1|2|A|1217
6TB3|1|2|G|1218
6TB3|1|2|A|1219
6TB3|1|2|C|1220
*
6TB3|1|2|G|1263
6TB3|1|2|G|1264
6TB3|1|2|G|1265
6TB3|1|2|U|1266
6TB3|1|2|G|1267
*
6TB3|1|2|U|1442
6TB3|1|2|U|1443
6TB3|1|2|A|1444
6TB3|1|2|G|1445
6TB3|1|2|A|1446
6TB3|1|2|C|1447
6TB3|1|2|G|1448

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31