J3_6TBV_005

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6TBV|1|16S1|U|871, 6TBV|1|16S1|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_005 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0566

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6TBV|1|16S1|C|826
6TBV|1|16S1|U|827
6TBV|1|16S1|U|828
6TBV|1|16S1|G|829
*
6TBV|1|16S1|C|857
6TBV|1|16S1|G|858
6TBV|1|16S1|G|859
6TBV|1|16S1|A|860
6TBV|1|16S1|G|861
*
6TBV|1|16S1|C|868
6TBV|1|16S1|G|869
6TBV|1|16S1|U|870
6TBV|1|16S1|U|871
6TBV|1|16S1|A|872
6TBV|1|16S1|A|873
6TBV|1|16S1|G|874

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S021

30S ribosomal protein S2

Chain S081

30S ribosomal protein S8

Chain S211

30S ribosomal protein S21