J3_6TBV_020

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6TBV|1|23S1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_020 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1053

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6TBV|1|23S1|C|1306
6TBV|1|23S1|A|1307
6TBV|1|23S1|A|1308
6TBV|1|23S1|G|1309
*
6TBV|1|23S1|C|1605
6TBV|1|23S1|C|1606
6TBV|1|23S1|C|1607
6TBV|1|23S1|A|1608
6TBV|1|23S1|A|1609
6TBV|1|23S1|A|1610
6TBV|1|23S1|C|1611
*
6TBV|1|23S1|G|1620
6TBV|1|23S1|U|1621
6TBV|1|23S1|G|1622

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L341

50S ribosomal protein L34