J3_6TBV_033

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6TBV|1|23S1|A|504, 6TBV|1|23S1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_033 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0912

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6TBV|1|23S1|G|30
6TBV|1|23S1|C|31
*
6TBV|1|23S1|G|474
6TBV|1|23S1|C|475
6TBV|1|23S1|G|476
6TBV|1|23S1|A|477
6TBV|1|23S1|A|478
6TBV|1|23S1|A|479
6TBV|1|23S1|A|480
6TBV|1|23S1|G|481
6TBV|1|23S1|A|482
6TBV|1|23S1|A|483
6TBV|1|23S1|C|484
*
6TBV|1|23S1|G|496
6TBV|1|23S1|A|497
6TBV|1|23S1|G|498
6TBV|1|23S1|U|499
6TBV|1|23S1|G|500
6TBV|1|23S1|A|501
6TBV|1|23S1|A|502
6TBV|1|23S1|A|503
6TBV|1|23S1|A|504
6TBV|1|23S1|A|505
6TBV|1|23S1|G|506
6TBV|1|23S1|A|507
6TBV|1|23S1|A|508
6TBV|1|23S1|C|509
6TBV|1|23S1|C|510

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L201

50S ribosomal protein L20

Chain L221

50S ribosomal protein L22

Chain L241

50S ribosomal protein L24