J3_6TC3_006

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_006 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.05

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6TC3|1|16S1|C|936
6TC3|1|16S1|A|937
6TC3|1|16S1|A|938
6TC3|1|16S1|G|939
*
6TC3|1|16S1|C|1344
6TC3|1|16S1|U|1345
6TC3|1|16S1|A|1346
6TC3|1|16S1|G|1347
6TC3|1|16S1|U|1348
6TC3|1|16S1|A|1349
6TC3|1|16S1|A|1350
*
6TC3|1|16S1|U|1372
6TC3|1|16S1|G|1373
6TC3|1|16S1|A|1374
6TC3|1|16S1|A|1375
6TC3|1|16S1|U|1376
6TC3|1|16S1|A|1377
6TC3|1|16S1|C|1378
6TC3|1|16S1|G|1379

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S071

30S ribosomal protein S7

Chain S091

30S ribosomal protein S9