J3_6TC3_034

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6TC3|1|23S1|U|34, 6TC3|1|23S1|U|448, 6TC3|1|23S1|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_034 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0684

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6TC3|1|23S1|C|32
6TC3|1|23S1|C|33
6TC3|1|23S1|U|34
6TC3|1|23S1|G|35
*
6TC3|1|23S1|C|445
6TC3|1|23S1|G|446
6TC3|1|23S1|A|447
6TC3|1|23S1|U|448
6TC3|1|23S1|A|449
6TC3|1|23S1|G|450
6TC3|1|23S1|U|451
6TC3|1|23S1|G|452
6TC3|1|23S1|A|453
6TC3|1|23S1|A|454
6TC3|1|23S1|C|455
6TC3|1|23S1|C|456
6TC3|1|23S1|A|457
6TC3|1|23S1|G|458
6TC3|1|23S1|U|459
6TC3|1|23S1|A|460
6TC3|1|23S1|C|461
*
6TC3|1|23S1|G|468
6TC3|1|23S1|G|469
6TC3|1|23S1|A|470
6TC3|1|23S1|A|471
6TC3|1|23S1|A|472
6TC3|1|23S1|G|473

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L201

50S ribosomal protein L20

Chain L231

50S ribosomal protein L23

Chain L341

50S ribosomal protein L34

Chain SPE1

SpeFL