J3_6TH6_023

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAUC*GUGG*CAUUAAAG

Length

16 nucleotides

Bulged bases

6TH6|1|BA|A|2622, 6TH6|1|BA|U|2623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TH6_023 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.1021

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6TH6|1|BA|C|2621
6TH6|1|BA|A|2622
6TH6|1|BA|U|2623
6TH6|1|BA|C|2624
*
6TH6|1|BA|G|2649
6TH6|1|BA|U|2650
6TH6|1|BA|G|2651
6TH6|1|BA|G|2652
*
6TH6|1|BA|C|2664
6TH6|1|BA|A|2665
6TH6|1|BA|U|2666
6TH6|1|BA|U|2667
6TH6|1|BA|A|2668
6TH6|1|BA|A|2669
6TH6|1|BA|A|2670
6TH6|1|BA|G|2671

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14