J3_6TH6_035

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UCGGUC*GGAAA*UA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TH6_035 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.2712

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6TH6|1|BA|U|1480
6TH6|1|BA|C|1481
6TH6|1|BA|G|1482
6TH6|1|BA|G|1483
6TH6|1|BA|U|1484
6TH6|1|BA|C|1485
*
6TH6|1|BA|G|1519
6TH6|1|BA|G|1520
6TH6|1|BA|A|1521
6TH6|1|BA|A|1522
6TH6|1|BA|A|1523
*
6TH6|1|BA|U|1540
6TH6|1|BA|A|1541

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L23

Chain Be

50S ribosomal protein L34e

Chain Bi

50S ribosomal protein L39e