J3_6TNN_016
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6TNN|1|U|U|32, 6TNN|1|U|U|493, 6TNN|1|U|C|501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TNN_016 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1218
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6TNN|1|U|C|30
6TNN|1|U|U|31
6TNN|1|U|U|32
6TNN|1|U|G|33
*
6TNN|1|U|C|490
6TNN|1|U|G|491
6TNN|1|U|A|492
6TNN|1|U|U|493
6TNN|1|U|A|494
6TNN|1|U|G|495
6TNN|1|U|U|496
6TNN|1|U|G|497
6TNN|1|U|A|498
6TNN|1|U|A|499
6TNN|1|U|C|500
6TNN|1|U|C|501
6TNN|1|U|A|502
6TNN|1|U|G|503
6TNN|1|U|U|504
6TNN|1|U|A|505
6TNN|1|U|C|506
*
6TNN|1|U|G|513
6TNN|1|U|G|514
6TNN|1|U|A|515
6TNN|1|U|A|516
6TNN|1|U|A|517
6TNN|1|U|G|518
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L20
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
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