J3_6TNU_009

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6TNU|1|2|A|1217, 6TNU|1|2|G|1445, 6TNU|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNU_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1646

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6TNU|1|2|C|1215
6TNU|1|2|C|1216
6TNU|1|2|A|1217
6TNU|1|2|G|1218
6TNU|1|2|A|1219
6TNU|1|2|C|1220
*
6TNU|1|2|G|1263
6TNU|1|2|G|1264
6TNU|1|2|G|1265
6TNU|1|2|U|1266
6TNU|1|2|G|1267
*
6TNU|1|2|U|1442
6TNU|1|2|U|1443
6TNU|1|2|A|1444
6TNU|1|2|G|1445
6TNU|1|2|A|1446
6TNU|1|2|C|1447
6TNU|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31