J3_6TNU_026

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

6TNU|1|BQ|G|2549, 6TNU|1|BQ|U|2550, 6TNU|1|BQ|U|2551, 6TNU|1|BQ|A|2554, 6TNU|1|BQ|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNU_026 not in the Motif Atlas

Homologous match to J3_8P9A_060

Geometric discrepancy: 0.1973

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|A|2529
6TNU|1|BQ|G|2530
6TNU|1|BQ|C|2531
6TNU|1|BQ|U|2532
*
6TNU|1|BQ|A|2547
6TNU|1|BQ|C|2548
6TNU|1|BQ|G|2549
6TNU|1|BQ|U|2550
6TNU|1|BQ|U|2551
6TNU|1|BQ|C|2552
6TNU|1|BQ|U|2553
6TNU|1|BQ|A|2554
6TNU|1|BQ|G|2555
6TNU|1|BQ|C|2556
6TNU|1|BQ|A|2557
6TNU|1|BQ|U|2558
6TNU|1|BQ|U|2559
6TNU|1|BQ|C|2560
6TNU|1|BQ|A|2561
6TNU|1|BQ|A|2562
6TNU|1|BQ|G|2563
*
6TNU|1|BQ|U|2578
6TNU|1|BQ|G|2579
6TNU|1|BQ|A|2580
6TNU|1|BQ|U|2581

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AN

60S ribosomal protein L27-A

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain AY

60S ribosomal protein L30

Chain BN

60S ribosomal protein L34-A