J3_6TNU_028

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6TNU|1|BQ|A|2887, 6TNU|1|BQ|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNU_028 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0938

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6TNU|1|BQ|U|2886
6TNU|1|BQ|A|2887
6TNU|1|BQ|U|2888
6TNU|1|BQ|C|2889
*
6TNU|1|BQ|G|2914
6TNU|1|BQ|U|2915
6TNU|1|BQ|U|2916
*
6TNU|1|BQ|A|2930
6TNU|1|BQ|C|2931
6TNU|1|BQ|U|2932
6TNU|1|BQ|A|2933
6TNU|1|BQ|A|2934
6TNU|1|BQ|U|2935
6TNU|1|BQ|A|2936

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3