J3_6TPQ_015
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 6TPQ|1|U|G|548, 6TPQ|1|U|U|552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_015 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2088
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6TPQ|1|U|G|28
6TPQ|1|U|C|29
*
6TPQ|1|U|G|519
6TPQ|1|U|U|520
6TPQ|1|U|G|521
6TPQ|1|U|A|522
6TPQ|1|U|A|523
6TPQ|1|U|A|524
6TPQ|1|U|A|525
6TPQ|1|U|G|526
6TPQ|1|U|C|527
6TPQ|1|U|A|528
6TPQ|1|U|C|529
*
6TPQ|1|U|G|540
6TPQ|1|U|A|541
6TPQ|1|U|G|542
6TPQ|1|U|U|543
6TPQ|1|U|G|544
6TPQ|1|U|A|545
6TPQ|1|U|A|546
6TPQ|1|U|A|547
6TPQ|1|U|G|548
6TPQ|1|U|A|549
6TPQ|1|U|G|550
6TPQ|1|U|A|551
6TPQ|1|U|U|552
6TPQ|1|U|C|553
6TPQ|1|U|C|554
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L20
- Chain l
- 50S ribosomal protein L22
- Chain n
- 50S ribosomal protein L24
Coloring options: