J3_6TPQ_016
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6TPQ|1|U|U|32, 6TPQ|1|U|U|493, 6TPQ|1|U|C|501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_016 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1275
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6TPQ|1|U|C|30
6TPQ|1|U|U|31
6TPQ|1|U|U|32
6TPQ|1|U|G|33
*
6TPQ|1|U|C|490
6TPQ|1|U|G|491
6TPQ|1|U|A|492
6TPQ|1|U|U|493
6TPQ|1|U|A|494
6TPQ|1|U|G|495
6TPQ|1|U|U|496
6TPQ|1|U|G|497
6TPQ|1|U|A|498
6TPQ|1|U|A|499
6TPQ|1|U|C|500
6TPQ|1|U|C|501
6TPQ|1|U|A|502
6TPQ|1|U|G|503
6TPQ|1|U|U|504
6TPQ|1|U|A|505
6TPQ|1|U|C|506
*
6TPQ|1|U|G|513
6TPQ|1|U|G|514
6TPQ|1|U|A|515
6TPQ|1|U|A|516
6TPQ|1|U|A|517
6TPQ|1|U|G|518
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L20
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
Coloring options: