J3_6U48_001

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0831

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|G|30
6U48|1|CA|C|31
*
6U48|1|CA|G|474
6U48|1|CA|C|475
6U48|1|CA|G|476
6U48|1|CA|A|477
6U48|1|CA|A|478
6U48|1|CA|A|479
6U48|1|CA|A|480
6U48|1|CA|G|481
*
6U48|1|CA|C|509
6U48|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein bL20

Chain CV

50S ribosomal protein uL24