J3_6U48_005

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2361

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|1055
6U48|1|CA|G|1056
6U48|1|CA|A|1057
*
6U48|1|CA|U|1081
6U48|1|CA|U|1082
6U48|1|CA|U|1083
6U48|1|CA|A|1084
6U48|1|CA|A|1085
6U48|1|CA|A|1086
6U48|1|CA|G|1087
*
6U48|1|CA|C|1102
6U48|1|CA|A|1103
6U48|1|CA|C|1104

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CJ

50S ribosomal protein uL11