J3_6U48_009

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0795

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|C|2091
6U48|1|CA|U|2092
6U48|1|CA|G|2093
*
6U48|1|CA|C|2196
6U48|1|CA|U|2197
6U48|1|CA|A|2198
6U48|1|CA|A|2199
6U48|1|CA|C|2200
*
6U48|1|CA|G|2223
6U48|1|CA|G|2224
6U48|1|CA|A|2225
6U48|1|CA|C|2226
6U48|1|CA|A|2227
6U48|1|CA|G|2228

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2

Chain CH

50S ribosomal protein bL9

Chain CY

50S ribosomal protein bL28