J3_6U48_013
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 6U48|1|CA|U|2833, 6U48|1|CA|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6U48_013 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1413
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6U48|1|CA|G|2812
6U48|1|CA|A|2813
6U48|1|CA|A|2814
6U48|1|CA|C|2815
*
6U48|1|CA|G|2831
6U48|1|CA|U|2832
6U48|1|CA|U|2833
6U48|1|CA|G|2834
6U48|1|CA|A|2835
6U48|1|CA|U|2836
*
6U48|1|CA|A|2882
6U48|1|CA|A|2883
6U48|1|CA|U|2884
6U48|1|CA|G|2885
6U48|1|CA|A|2886
6U48|1|CA|A|2887
6U48|1|CA|C|2888
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein bL32
- Chain CD
- 50S ribosomal protein uL3
- Chain CO
- 50S ribosomal protein bL17
- Chain CT
- 50S ribosomal protein uL22
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