J3_6U48_015

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6U48|1|CA|A|504, 6U48|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_015 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0874

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|G|30
6U48|1|CA|C|31
*
6U48|1|CA|G|474
6U48|1|CA|C|475
6U48|1|CA|G|476
6U48|1|CA|A|477
6U48|1|CA|A|478
6U48|1|CA|A|479
6U48|1|CA|A|480
6U48|1|CA|G|481
6U48|1|CA|A|482
6U48|1|CA|A|483
6U48|1|CA|C|484
*
6U48|1|CA|G|496
6U48|1|CA|A|497
6U48|1|CA|G|498
6U48|1|CA|U|499
6U48|1|CA|G|500
6U48|1|CA|A|501
6U48|1|CA|A|502
6U48|1|CA|A|503
6U48|1|CA|A|504
6U48|1|CA|A|505
6U48|1|CA|G|506
6U48|1|CA|A|507
6U48|1|CA|A|508
6U48|1|CA|C|509
6U48|1|CA|C|510

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CR

50S ribosomal protein bL20

Chain CT

50S ribosomal protein uL22

Chain CV

50S ribosomal protein uL24