J3_6UO1_018

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6UO1|1|1a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_018 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0993

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6UO1|1|1a|C|826
6UO1|1|1a|U|827
6UO1|1|1a|A|828
6UO1|1|1a|G|829
*
6UO1|1|1a|C|857
6UO1|1|1a|G|858
6UO1|1|1a|A|859
6UO1|1|1a|A|860
6UO1|1|1a|G|861
*
6UO1|1|1a|C|868
6UO1|1|1a|G|869
6UO1|1|1a|U|870
6UO1|1|1a|U|871
6UO1|1|1a|A|872
6UO1|1|1a|A|873
6UO1|1|1a|G|874

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1h

30S ribosomal protein S8