J3_6V39_020
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_020 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1546
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6V39|1|sN1|U|940
6V39|1|sN1|G|941
6V39|1|sN1|G|942
6V39|1|sN1|A|943
*
6V39|1|sN1|U|1232
6V39|1|sN1|A|1233
6V39|1|sN1|C|1234
*
6V39|1|sN1|G|1334
6V39|1|sN1|G|1335
6V39|1|sN1|A|1336
6V39|1|sN1|A|1337
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain m
- 30S ribosomal protein S13
- Chain v
- Transfer RNA; tRNA
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