3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CGAAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6V3A_006 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.1643
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6V3A|1|AN1|C|1293
6V3A|1|AN1|G|1294
6V3A|1|AN1|A|1295
6V3A|1|AN1|A|1296
6V3A|1|AN1|A|1297
6V3A|1|AN1|G|1298
*
6V3A|1|AN1|C|1623
6V3A|1|AN1|A|1624
6V3A|1|AN1|G|1625
*
6V3A|1|AN1|C|1637
6V3A|1|AN1|A|1638
6V3A|1|AN1|A|1639
6V3A|1|AN1|G|1640

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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