J3_6V3B_026

3D structure

PDB id

6V3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC

Length

28 nucleotides

Bulged bases

6V3B|1|AN1|U|503, 6V3B|1|AN1|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3B_026 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1617

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6V3B|1|AN1|G|37
6V3B|1|AN1|C|38
*
6V3B|1|AN1|G|473
6V3B|1|AN1|C|474
6V3B|1|AN1|G|475
6V3B|1|AN1|A|476
6V3B|1|AN1|A|477
6V3B|1|AN1|A|478
6V3B|1|AN1|A|479
6V3B|1|AN1|G|480
6V3B|1|AN1|A|481
6V3B|1|AN1|A|482
6V3B|1|AN1|C|483
*
6V3B|1|AN1|G|495
6V3B|1|AN1|A|496
6V3B|1|AN1|G|497
6V3B|1|AN1|U|498
6V3B|1|AN1|G|499
6V3B|1|AN1|A|500
6V3B|1|AN1|A|501
6V3B|1|AN1|A|502
6V3B|1|AN1|U|503
6V3B|1|AN1|A|504
6V3B|1|AN1|G|505
6V3B|1|AN1|A|506
6V3B|1|AN1|U|507
6V3B|1|AN1|C|508
6V3B|1|AN1|C|509

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24