J3_6V3D_006

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3D_006 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1666

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6V3D|1|AN1|C|1293
6V3D|1|AN1|G|1294
6V3D|1|AN1|A|1295
6V3D|1|AN1|A|1296
6V3D|1|AN1|A|1297
6V3D|1|AN1|G|1298
*
6V3D|1|AN1|C|1623
6V3D|1|AN1|A|1624
6V3D|1|AN1|G|1625
*
6V3D|1|AN1|C|1637
6V3D|1|AN1|A|1638
6V3D|1|AN1|A|1639
6V3D|1|AN1|G|1640

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains