J3_6V3D_007

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAAG*CCGAAAC*GUG

Length

14 nucleotides

Bulged bases

6V3D|1|AN1|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3D_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2246

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6V3D|1|AN1|C|1301
6V3D|1|AN1|A|1302
6V3D|1|AN1|A|1303
6V3D|1|AN1|G|1304
*
6V3D|1|AN1|C|1603
6V3D|1|AN1|C|1604
6V3D|1|AN1|G|1605
6V3D|1|AN1|A|1606
6V3D|1|AN1|A|1607
6V3D|1|AN1|A|1608
6V3D|1|AN1|C|1609
*
6V3D|1|AN1|G|1618
6V3D|1|AN1|U|1619
6V3D|1|AN1|G|1620

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34