J3_6V3D_009

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3D_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0989

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6V3D|1|AN1|C|2087
6V3D|1|AN1|U|2088
6V3D|1|AN1|G|2089
*
6V3D|1|AN1|C|2192
6V3D|1|AN1|U|2193
6V3D|1|AN1|A|2194
6V3D|1|AN1|A|2195
6V3D|1|AN1|C|2196
*
6V3D|1|AN1|G|2219
6V3D|1|AN1|G|2220
6V3D|1|AN1|A|2221
6V3D|1|AN1|C|2222
6V3D|1|AN1|C|2223
6V3D|1|AN1|G|2224

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28