J3_6V3E_011

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6V3E|1|sN1|U|1237, 6V3E|1|sN1|C|1299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3E_011 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2378

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6V3E|1|sN1|C|1234
6V3E|1|sN1|A|1235
6V3E|1|sN1|A|1236
6V3E|1|sN1|U|1237
6V3E|1|sN1|G|1238
*
6V3E|1|sN1|C|1293
6V3E|1|sN1|G|1294
6V3E|1|sN1|U|1295
6V3E|1|sN1|A|1296
6V3E|1|sN1|G|1297
6V3E|1|sN1|U|1298
6V3E|1|sN1|C|1299
6V3E|1|sN1|C|1300
*
6V3E|1|sN1|G|1331
6V3E|1|sN1|U|1332
6V3E|1|sN1|C|1333
6V3E|1|sN1|G|1334

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain m

30S ribosomal protein S13