3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
6VU3|1|a|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VU3_019 not in the Motif Atlas
Homologous match to J3_7A0S_007
Geometric discrepancy: 0.111
The information below is about J3_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_71677.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6VU3|1|a|C|1306
6VU3|1|a|A|1307
6VU3|1|a|A|1308
6VU3|1|a|G|1309
*
6VU3|1|a|C|1605
6VU3|1|a|C|1606
6VU3|1|a|C|1607
6VU3|1|a|A|1608
6VU3|1|a|A|1609
6VU3|1|a|A|1610
6VU3|1|a|C|1611
*
6VU3|1|a|G|1620
6VU3|1|a|U|1621
6VU3|1|a|G|1622

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L34

Coloring options:


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