3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6VU3|1|a|A|504, 6VU3|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VU3_032 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1031
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6VU3|1|a|G|30
6VU3|1|a|C|31
*
6VU3|1|a|G|474
6VU3|1|a|C|475
6VU3|1|a|G|476
6VU3|1|a|A|477
6VU3|1|a|A|478
6VU3|1|a|A|479
6VU3|1|a|A|480
6VU3|1|a|G|481
6VU3|1|a|A|482
6VU3|1|a|A|483
6VU3|1|a|C|484
*
6VU3|1|a|G|496
6VU3|1|a|A|497
6VU3|1|a|G|498
6VU3|1|a|U|499
6VU3|1|a|G|500
6VU3|1|a|A|501
6VU3|1|a|A|502
6VU3|1|a|A|503
6VU3|1|a|A|504
6VU3|1|a|A|505
6VU3|1|a|G|506
6VU3|1|a|A|507
6VU3|1|a|A|508
6VU3|1|a|C|509
6VU3|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain 3
50S ribosomal protein L24
Chain z
50S ribosomal protein L20

Coloring options:


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