J3_6VWL_013
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 6VWL|1|1|U|1240, 6VWL|1|1|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWL_013 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.3065
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6VWL|1|1|C|1237
6VWL|1|1|A|1238
6VWL|1|1|A|1239
6VWL|1|1|U|1240
6VWL|1|1|G|1241
*
6VWL|1|1|C|1296
6VWL|1|1|G|1297
6VWL|1|1|U|1298
6VWL|1|1|A|1299
6VWL|1|1|G|1300
6VWL|1|1|U|1301
6VWL|1|1|C|1302
6VWL|1|1|C|1303
*
6VWL|1|1|G|1334
6VWL|1|1|U|1335
6VWL|1|1|C|1336
6VWL|1|1|G|1337
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain f
- 30S ribosomal protein S7
- Chain l
- 30S ribosomal protein S13
Coloring options: