3D structure

PDB id
6VWM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
6VWM|1|1|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWM_004 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1293
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

6VWM|1|1|C|826
6VWM|1|1|U|827
6VWM|1|1|U|828
6VWM|1|1|G|829
*
6VWM|1|1|C|857
6VWM|1|1|G|858
6VWM|1|1|G|859
6VWM|1|1|A|860
6VWM|1|1|G|861
*
6VWM|1|1|C|868
6VWM|1|1|G|869
6VWM|1|1|U|870
6VWM|1|1|U|871
6VWM|1|1|A|872
6VWM|1|1|A|873
6VWM|1|1|G|874

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain a
30S ribosomal protein S2
Chain g
30S ribosomal protein S8
Chain t
30S ribosomal protein S21

Coloring options:


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