J3_6VWM_021
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 6VWM|1|2|U|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWM_021 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.1914
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VWM|1|2|C|2295
6VWM|1|2|U|2296
6VWM|1|2|A|2297
*
6VWM|1|2|U|2321
6VWM|1|2|A|2322
6VWM|1|2|G|2323
*
6VWM|1|2|C|2332
6VWM|1|2|A|2333
6VWM|1|2|U|2334
6VWM|1|2|A|2335
6VWM|1|2|A|2336
6VWM|1|2|G|2337
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L18
- Chain U
- 50S ribosomal protein L27
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