3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
6VWN|1|1|A|975, 6VWN|1|1|G|976, 6VWN|1|1|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWN_006 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.2203
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6VWN|1|1|U|955
6VWN|1|1|U|956
6VWN|1|1|U|957
6VWN|1|1|A|958
6VWN|1|1|A|959
6VWN|1|1|U|960
6VWN|1|1|U|961
6VWN|1|1|C|962
*
6VWN|1|1|G|973
6VWN|1|1|A|974
6VWN|1|1|A|975
6VWN|1|1|G|976
6VWN|1|1|A|977
6VWN|1|1|A|978
6VWN|1|1|C|979
6VWN|1|1|C|980
6VWN|1|1|U|981
6VWN|1|1|U|982
6VWN|1|1|A|983
6VWN|1|1|C|984
*
6VWN|1|1|G|1221
6VWN|1|1|G|1222
6VWN|1|1|C|1223
6VWN|1|1|U|1224
6VWN|1|1|A|1225

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain i
30S ribosomal protein S10
Chain l
30S ribosomal protein S13
Chain m
30S ribosomal protein S14
Chain r
30S ribosomal protein S19

Coloring options:


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