3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWN_009 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1965
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6VWN|1|1|C|1063
6VWN|1|1|G|1064
6VWN|1|1|U|1065
6VWN|1|1|C|1066
6VWN|1|1|A|1067
6VWN|1|1|G|1068
*
6VWN|1|1|C|1107
6VWN|1|1|G|1108
6VWN|1|1|C|1109
6VWN|1|1|A|1110
6VWN|1|1|A|1111
6VWN|1|1|C|1112
6VWN|1|1|C|1113
*
6VWN|1|1|G|1187
6VWN|1|1|A|1188
6VWN|1|1|U|1189
6VWN|1|1|G|1190
6VWN|1|1|A|1191
6VWN|1|1|C|1192
6VWN|1|1|G|1193

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S3
Chain d
30S ribosomal protein S5
Chain h
30S ribosomal protein S9
Chain i
30S ribosomal protein S10
Chain m
30S ribosomal protein S14

Coloring options:


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