J3_6VWN_018

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VWN|1|2|C|1607, 6VWN|1|2|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWN_018 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3551

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6VWN|1|2|C|1306
6VWN|1|2|A|1307
6VWN|1|2|A|1308
6VWN|1|2|G|1309
*
6VWN|1|2|C|1605
6VWN|1|2|C|1606
6VWN|1|2|C|1607
6VWN|1|2|A|1608
6VWN|1|2|A|1609
6VWN|1|2|A|1610
6VWN|1|2|C|1611
*
6VWN|1|2|G|1620
6VWN|1|2|U|1621
6VWN|1|2|G|1622

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34